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Optical characterization of heat dependent collagen denaturation via Mueller matrix polarimetry in combination with principal component analysis

dc.contributor.authorDerman, Deniz
dc.contributor.authorOpar, Ekin
dc.contributor.authorFerhanoğlu, Onur
dc.contributor.authorPolat, Ömer
dc.contributor.authorKazanci, Murat
dc.date.accessioned2026-01-25T03:03:10Z
dc.date.issued2021-03-15
dc.description.abstractPolarization properties of collagen in acidic and natural solutions were analyzed by a decoupling analytical technique based on Mueller matrix polarimetry (MMP). The proposed method was employed to derive five effective optical parameters of collagen solutions: (1) orientation angle of linear birefringence, (2) phase retardance of linear birefringence, (3) orientation angle of linear dichroism, (4) value of linear dichroism, and (5) optical rotation angle of circular birefringence. The temperature dependence of optical parameters was observed, and the denaturation (transition) temperature of collagen in two different solvents was deduced as <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mn>33.38</mml:mn> </mml:mrow> <mml:mspace width="thickmathspace"/> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mo>±</mml:mo> </mml:mrow> <mml:mspace width="thickmathspace"/> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:msup> <mml:mn>2.78</mml:mn> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mo>∘</mml:mo> </mml:mrow> </mml:msup> <mml:mi mathvariant="normal">C</mml:mi> </mml:mrow> </mml:math> and <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mn>36.83</mml:mn> </mml:mrow> <mml:mspace width="thickmathspace"/> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mo>±</mml:mo> </mml:mrow> <mml:mspace width="thickmathspace"/> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:msup> <mml:mn>2.43</mml:mn> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mo>∘</mml:mo> </mml:mrow> </mml:msup> <mml:mrow class="MJX-TeXAtom-ORD"> <mml:mi mathvariant="normal">C</mml:mi> </mml:mrow> </mml:mrow> </mml:math> for acidic and natural solutions, respectively, based on a total of 100 measurements. Furthermore, using scatter plots generated by the first two components of principal component analysis (PCA), it was possible to distinguish all denaturized versus native and acid versus dialysis samples based on scatter plots. In comparison to higher cost and complex alternatives, such as circular dichroism spectroscopy, our results show the promise of using the combination of MMP and PCA as a low-cost method for identification and characterization of collagen denaturation.
dc.description.urihttps://doi.org/10.1364/ao.418805
dc.description.urihttps://dx.doi.org/10.1364/ao.418805
dc.identifier.doi10.1364/ao.418805
dc.identifier.eissn2155-3165
dc.identifier.issn1559-128X
dc.identifier.openairedoi_dedup___::53fe53022017b6bf18c5a120bbd3fe99
dc.identifier.orcid0000-0002-5622-6960
dc.identifier.startpage2543
dc.identifier.urihttps://hdl.handle.net/11527/43640
dc.identifier.volume60
dc.language.isoeng
dc.publisherOptica Publishing Group
dc.relation.ispartofApplied Optics
dc.rightsCLOSED
dc.titleOptical characterization of heat dependent collagen denaturation via Mueller matrix polarimetry in combination with principal component analysis
dc.typeArticle
dspace.entity.typePublication

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