Biogas productivity of anaerobic digestion process is governed by a core bacterial microbiota

Abstract

Abstract Anaerobic digestion (AD) has been commercially operated worldwide in full scale as a resource recovery technology underpinning a circular economy. However, problems such as a long start-up time, or system instability, have been reported in response to operational shocks. These issues are usually linked to the dynamics of the functional microbiota in AD. Exploring the microbiota-functionality nexus (MFN) could be pivotal to understand the reasons behind these difficulties, and hence improving AD performance. Here we present a systematic MFN study based on 138 samples taken from 20 well-profiled lab-scale AD reactors operated for up to two years. All the reactors were operated in the same lab within the same period of time using the same methodology to harvest physio-chemical and molecular data, including key monitoring parameters, qPCR, and 16S sequencing results. The results showed a core bacterial microbiota prevailing in all reactor types, including Bacillus, Clostridium, Bacteroides, Eubacterium, Cytophaga, Anaerophaga, and Syntrophomonas, while various methanogens dominated different communities due to different inocula origins, reactor temperatures, or salinity levels. This core bacterial microbiota well correlated with biogas production (Pearson correlation coefficient of 0.481, p